PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002704.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 334aa    MW: 36072.9 Da    PI: 7.0441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002704.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.9e-09192232954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Do002704.1 192 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 232
                 699*****************87.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13189242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-7193232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.11E-7206237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHPNPAPPPP PPLPFHLSTS HHHHHQPPPH  60
PPHHQHHHHH PGLDPSPSSS LFPPHNHRLH HLGLDIDPAS SHHRHHEYGG GHEQQEPGGH  120
EQDEMRQQEA GAGHQEDRGG AGAEDVEEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN  180
VRISEDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIRYIK FLKRQVQELQ  240
HQPPQQYPGA AAAGAAAGGA TAAGPSTSVV GPPGRPGGPF LPLGPGPLID WAGFVRPVDI  300
HGPTSSSSSS SMGGAHAALG FGFSSAGQSS HGMH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-149BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-149EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972449.11e-117PREDICTED: transcription factor HEC1-like
TrEMBLK3YLS31e-116K3YLS3_SETIT; Uncharacterized protein
STRINGSi015197m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-35bHLH family protein